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ENteric Immunity SImulator: A Tool for In Silico Study of Mucosal Immune Responses
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The following is a poster Maksudul presented during the 2012 Symposium on Modeling Immune Responses from Complex Data hosted from June [...]
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PPAR γ activation drives Th17 cells into a Treg phenotype
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Carbo, A., R. Hontecillas, S. Hoops, B. Kronsteiner, P. Lu, K. Wendelsdorf, Y. Mei, S. Eubank, M. Marathe, and J. Bassaganya-Riera [...]
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Modulation of immune responses to Clostridium difficile by peroxisome proliferator-activated receptor γ and miRNA-146b
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Viladomiu, M., R. Hontecillas, M. Pedragosa, P. Michalak, K. Michalak, R.L. Guerrant, J.K. Roche, C.A. Warren and J. Bassaganya-Riera [...]
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Th17 responses driven via PPAR γ blockade lead to faster recovery from enteroaggregative Escherichia
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Washington, C., J. Bassaganya-Riera, M. Viladomiu, M. Pedragosa, R.L. Guerrant, J.K. Roche and R. Hontecillas (2012) Th17 responses [...]
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Helicobacter pylori infection in pigs is dominated by a Th1 and cytotoxic immune response
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Kronsteiner, B., J. Bassaganya-Riera, C. Washington, S. Vento, M. Pedragosa, M. Viladomiu, A. Carbo and R. Hontecillas (2012) [...]
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Immunomodulatory actions of lanthionine synthetase C-like 2-based drugs
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Lu, P., R. Hontecillas, M. Viladomiu, M. Pedragosa, A. Carbo, D.R. Bevan, S.N. Lewis, and J. Bassaganya-Riera (2012) Immunomodulatory [...]
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A lipidomics analysis of influenza infection and PPAR g activation
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Monroe, J., J. Bassaganya-Riera, K. Ray, R. Helm, B. Kronsteiner, and R. Hontecillas (2012) A lipidomics analysis of influenza [...]
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Computational analysis of peroxisome proliferator-activated receptor-gamma as a nutraceutical target
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Stephanie N. Lewis, Zulma Garcia, Lera Brannan, Amir J. Guri, Pinyi Lu, Raquel Hontecillas, Josep Bassaganya-Riera, and David R. Bevan [...]
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MIEP team presented COPASI in MIB
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COmplex PAthway SImulator: A Tool for Modeling Complex Immunological Systems New discoveries in immunology have triggered the [...]
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MIEP team presented ENISI at MIB
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ENteric Immunity SImulator: A Tool for in silico Study of Mucosal Immunity ENISI is a tool for mucosal immunologists to test and [...]
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Systems modeling of immune responses to enteric pathogens
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Bassaganya-Riera, J. (2013) Invited A.L. Bortree Lecturer; Systems modeling of immune responses to enteric pathogens, Penn State University, State College, PA.
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Quantitative Systems Immunology Symposium
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Bassaganya-Riera, J. (2013) Invited speaker; Quantitative Systems Immunology Symposium, Boston University, Boston, MA.
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Predictive Modeling of Host Responses to Gut Pathogens
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Bassaganya-Riera, J. (2013) Invited speaker; Predictive Modeling of Host Responses to Gut Pathogens, University of Louisville, Louisville, KY.
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Carotenoids
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Bassaganya-Riera, J. (2013) Invited speaker; Carotenoids Gordon Research Conference, Ventura, CA.
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Modeling CD4+ T cell differentiation and plasticity
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Bassaganya-Riera, J. (2012) Invited speaker; Modeling CD4+ T cell differentiation and plasticity, Yale University, New Haven, CT.
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Modeling Immunity for Biodefense Symposium, Center for Biodefense Immune Modeling
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Bassaganya-Riera, J. (2012) Invited speaker; Modeling Immunity for Biodefense Symposium, Center for Biodefense Immune Modeling, University of Rochester, Rochester, NY.
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Modeling Immune Responses and Immunoinformatics Research
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Bassaganya-Riera, J. (2012) Invited speaker; Modeling Immune Responses and Immunoinformatics Research, Arkansas Biosciences Institute, Arkansas State University, Jonesboro, AK.
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Development of anti-inflammatories and anti-diabetic drugs and pharmaceuticals
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Bassaganya-Riera, J. (2010) Invited speaker; Center for Innovative Technologies; Development of anti-inflammatories and anti-diabetic drugs and pharmaceuticals. Herndon, VA.
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Modeling Immunity to Enteric Pathogens
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Bassaganya-Riera, J. (2010) Invited speaker; Modeling Immunity to Enteric Pathogens. Middle Atlantic Regional Center for Emerging Infectious Diseases and Biodefense Annual Meeting, Philadephia, PA.
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Modeling Immunity to Enteric Pathogens
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Bassaganya-Riera,J. (2010) Invited speaker; Modeling Immunity to Enteric Pathogens. Modeling Immunity for Biodefense Contract Initiation Meeting, Bethesda, MD.
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Phase III Placebo-Controlled, Randomized Clinical Trial with Synthetic Crohn's disease Patients to Evaluate Treatment Response
- Abedi, V., P. Lu, R. Hontecillas, M. Verma, G. Vess, C. Philipson, A. Carbo, A. Leber, N.T. Juni, S. Hoops, J. Bassaganya-Riera. Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology – Systems & Applications. In Press: Elsevier/MK 2015.
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Modeling exercises
- Abedi, V., S. Hoops, R. Hontecillas, A. Carbo, C. Philipson, M. Viladomiu, A. Leber, P. Lu, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Multiscale Modeling: Concepts, Technologies, and Use Cases in Immunology
- Abedi, V., R. Hontecillas, A. Carbo, C. Philipson, S. Hoops, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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From Big Data Analytics and Network Inference to Systems Modeling
- Michalak, P., B.W. Sobral, V. Abedi, Y.B. Kim, X. Deng, C. Philipson, M. Viladomiu, P. Lu, K. Wendelsdorf, R. Hontecillas, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Agent-Based Modeling and High Performance Computing
- Alam, M., V. Abedi, J. Bassaganya-Riera, K. Wendelsdorf, K. Bisset, X. Deng, S. Eubank, R. Hontecillas, S. Hoops, M. Marathe. Computational Immunology: Models and Tools. Elsevier 2015.
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Ordinary Differential Equations (ODE) based Modeling
- Hoops, S., R. Hontecillas, V. Abedi, A. Leber, C. Philipson, A. Carbo, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Immunoinformatics cybernfrastructure for modeling and analytics
- Hoops, S., B.W. Sobral, P. Michalak, V. Abedi, B. Kronsteiner, R. Hontecillas, M. Viladomiu, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Use of Computational Modeling in Immunological Research
- Hontecillas, R., J. Bassaganya-Riera, C. Philipson, A. Leber, M. Viladomiu, A. Carbo, K. Wendelsdorf, S. Hoops. Computational Immunology: Models and Tools. Elsevier 2015.
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Computational Modeling
- Bassaganya-Riera, J., R. Hontecillas, V. Abedi, A. Carbo, C. Philipson, S. Hoops. Computational Immunology: Models and Tools. Elsevier 2015.
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Introduction to Computational Immunology
- Bassaganya-Riera, J., R. Hontecillas. Computational Immunology: Models and Tools. Elsevier 2015.
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Modulation of CD8+ T cell Responses by Conjugated Linoleic Acid
- Bassaganya-Riera, J, R. Hontecillas. Advances in CLA Research. Champaign, IL: American Oil Chemists Society Press 2006.
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Computational Immunology: Models, tools and approaches for systems immunology
- Bassaganya-Riera, J.. Elsevier 2015.
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Literature mining and ontology mapping applied to big data
- Abedi V, M. Yeasin, R. Zand. Mining Big Data to Improve National Security. Elsevier 2015.
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Supervised Learning with Artificial Neural Network in Modeling of Cell Differentiation Process
- Lu, P, V. Abedi, Y. Mei, R. Hontecillas, C. Philipson, S. Hoops, A. Carbo, J. Bassaganya-Riera,. Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology (1st ed.). Burlington, Massachusetts: Morgan Kaufmann (an imprint of Elsevier) 2015. 1-18
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Method of Using Punicic Acid to Enhance Immune Response and Prevent Metabolic Disorders.
- Bassaganya-Riera, J.
International Patent Application Serial No. PCT/US2005/001811 U.S. Patent No: 8,258,188
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Method of Using Punicic Acid to Enhance Immune Response and Prevent Metabolic Disorders.
- Bassaganya-Riera, J.
European Patent Application Serial No. 05711709.5
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Method of Using Punicic Acid to Enhance Immune Response and Prevent Metabolic Disorders.
- Bassaganya-Riera, J.
Chinese Patent Application Serial No. 2005800088789
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Method of Using Catalpic Acid to Treat and Prevent Metabolic Disorders.
- Bassaganya-Riera, J.
U.S. Patent No: 7,687,544
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Method of Using Abscisic Acid to Treat and Prevent Diabetes and Inflammation.
- Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
U.S. Patent No: 7,741,367.
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Method of Using Abscisic Acid to Treat and Prevent Diseases and Disorders.
- Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
U.S. Patent No: 1,986,624.
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Method of Using Abscisic Acid to Treat and Prevent Diabetes and Inflammation.
- Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
International Patent Application Serial No. PCT/US2007/003366
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Method of Using Abscisic Acid to Treat and Prevent Diabetes and Inflammation.
- Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
European Patent Application Serial No. 07763254.5
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Method of Using Catalpic Acid to Treat and Prevent Hyperinsulinemia.
- Bassaganya-Riera, J.
U.S. Patent No: 7,834,058
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Method of Using Catalpic Acid to Dyslipidemia.
- Bassaganya-Riera, J.
U.S. Patent No: 8,084,500
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Method of using Conjugated Linoleic Acid to Enhance Thymocyte Development.
- M. O’Shea and Bassaganya-Riera, J.
European Patent Application Serial No. 06250952.6
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Method of using probiotic bacteria to prevent obesity and type 2 diabetes.
- Bassaganya-Riera, J., R. Hontecillas, MG Dominguez-Bello, B. Sobral
U.S. Provisional Patent Application No: 60/942,016.
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Method of Using Nutraceuticals for Ameliorating Hypertension and Vascular Inflammation.
- Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
(08.094 VTIP Disclosure); U.S. Provisional Patent Application No: 61/095662. U.S. Patent Application No. 12/869,237.
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Method of synergistically enhancing the therapeutic efficacy and safety of medications through a combination therapy.
- Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
(09-070 VTIP Disclosure); U.S. Provisional Patent Application No: 61/147773. U.S. Patent Application No. 12/695,915; 13/905,888 & EU10736394.7
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Method of synergistically enhancing the therapeutic efficacy and safety of medications through a combination therapy.
- Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
International Patent Application Serial No. PCT/US2010/022390.
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Method of using ABA for preventing and treating gut inflammatory disorders.
- Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
(10-066 VTIP Disclosure). CIP Application No: 12/712,899; Issued 8,367,727
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Method of using lanthionine synthetase component C-like proteins as molecular targets for preventing and treating diseases and disorders.
- Bassaganya-Riera, J., P. Lu, and R. Hontecillas
(10-116 VTIP) Provisional Patent Application No: 61/331,086; U.S. Patent Application No. 13/100,795
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Method of using lanthionine synthetase component C-like proteins as molecular targets for preventing and treating diseases and disorders.
- Bassaganya-Riera, J., P. Lu, and R. Hontecillas
(10-116 VTIP) PCT/US11/35185. Notice of Allowance 13/100,795 and EU 11778258.1
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Method of Preventing and Treating Inflammatory Diseases and Disorders with Abscisic Acid.
- Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
(10-134 VTIP) Provisional Patent Application No: 61/348,326, International application number: PCT/US11/38063. Issue fee paid
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Novel LANCL2-based Therapeutics.
- Bassaganya-Riera, J., A. Carbo, J. Cooper, R. Gandour, and R. Hontecillas
Provisional Patent Applications No: 62/068,322 & 62/101,164.