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Novel Orally Active Ligands of Lanthionine Synthetase C-like protein 2 Ameliorate Influenza-related Inflammation and Immunopathology
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Philipson C.W., P. Lu, J. Bassaganya-Riera, S. Vento, A. Carbo, M. Viladomiu, S. Kale, X. Zhang, A. Uren, A. Kallarakal, B. Xu, and R. [...]
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Mucosal antimicrobial protection toward Enteroaggregative Escherichia coli infection is modulated by dietary tryptophan through an IL17-dependent mechanism
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Philipson C.W., J. Bassaganya-Riera, M. Viladomiu, A. Carbo, K. Eden, and R. Hontecillas (2014) Mucosal antimicrobial protection [...]
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Regulation of Helicobacter Pylori Replication by Macrophage PPAR γ
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Kronsteiner-Dobramysl B, J. Bassaganya-Riera, M. Viladomiu, C. Philipson, E. Schiff and R. Hontecillas (2014) Regulation of [...]
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Immune modulatory mechanisms of Oncostenum bojerianum extracts during Clostridium difficile infection in mice
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Viladomiu M., R. Hontecillas, D. GI. Kingston, A. Eaton, X. Zhang, C. W. Philipson, E. Schiff, K. Eden, P. Lu, A. Carbo and J. [...]
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ENteric Immunity SImulator: A Tool for In Silico Study of Mucosal Immune Responses
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The following is a poster Maksudul presented during the 2012 Symposium on Modeling Immune Responses from Complex Data hosted from June [...]
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PPAR γ activation drives Th17 cells into a Treg phenotype
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Carbo, A., R. Hontecillas, S. Hoops, B. Kronsteiner, P. Lu, K. Wendelsdorf, Y. Mei, S. Eubank, M. Marathe, and J. Bassaganya-Riera [...]
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Modulation of immune responses to Clostridium difficile by peroxisome proliferator-activated receptor γ and miRNA-146b
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Viladomiu, M., R. Hontecillas, M. Pedragosa, P. Michalak, K. Michalak, R.L. Guerrant, J.K. Roche, C.A. Warren and J. Bassaganya-Riera [...]
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Th17 responses driven via PPAR γ blockade lead to faster recovery from enteroaggregative Escherichia
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Washington, C., J. Bassaganya-Riera, M. Viladomiu, M. Pedragosa, R.L. Guerrant, J.K. Roche and R. Hontecillas (2012) Th17 responses [...]
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Helicobacter pylori infection in pigs is dominated by a Th1 and cytotoxic immune response
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Kronsteiner, B., J. Bassaganya-Riera, C. Washington, S. Vento, M. Pedragosa, M. Viladomiu, A. Carbo and R. Hontecillas (2012) [...]
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Immunomodulatory actions of lanthionine synthetase C-like 2-based drugs
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Lu, P., R. Hontecillas, M. Viladomiu, M. Pedragosa, A. Carbo, D.R. Bevan, S.N. Lewis, and J. Bassaganya-Riera (2012) Immunomodulatory [...]
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Systems modeling of immune responses to enteric pathogens
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Bassaganya-Riera, J. (2013) Invited A.L. Bortree Lecturer; Systems modeling of immune responses to enteric pathogens, Penn State University, State College, PA.
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Quantitative Systems Immunology Symposium
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Bassaganya-Riera, J. (2013) Invited speaker; Quantitative Systems Immunology Symposium, Boston University, Boston, MA.
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Predictive Modeling of Host Responses to Gut Pathogens
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Bassaganya-Riera, J. (2013) Invited speaker; Predictive Modeling of Host Responses to Gut Pathogens, University of Louisville, Louisville, KY.
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Carotenoids
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Bassaganya-Riera, J. (2013) Invited speaker; Carotenoids Gordon Research Conference, Ventura, CA.
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Modeling CD4+ T cell differentiation and plasticity
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Bassaganya-Riera, J. (2012) Invited speaker; Modeling CD4+ T cell differentiation and plasticity, Yale University, New Haven, CT.
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Modeling Immunity for Biodefense Symposium, Center for Biodefense Immune Modeling
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Bassaganya-Riera, J. (2012) Invited speaker; Modeling Immunity for Biodefense Symposium, Center for Biodefense Immune Modeling, University of Rochester, Rochester, NY.
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Modeling Immune Responses and Immunoinformatics Research
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Bassaganya-Riera, J. (2012) Invited speaker; Modeling Immune Responses and Immunoinformatics Research, Arkansas Biosciences Institute, Arkansas State University, Jonesboro, AK.
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Development of anti-inflammatories and anti-diabetic drugs and pharmaceuticals
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Bassaganya-Riera, J. (2010) Invited speaker; Center for Innovative Technologies; Development of anti-inflammatories and anti-diabetic drugs and pharmaceuticals. Herndon, VA.
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Modeling Immunity to Enteric Pathogens
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Bassaganya-Riera, J. (2010) Invited speaker; Modeling Immunity to Enteric Pathogens. Middle Atlantic Regional Center for Emerging Infectious Diseases and Biodefense Annual Meeting, Philadephia, PA.
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Modeling Immunity to Enteric Pathogens
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Bassaganya-Riera,J. (2010) Invited speaker; Modeling Immunity to Enteric Pathogens. Modeling Immunity for Biodefense Contract Initiation Meeting, Bethesda, MD.
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Phase III Placebo-Controlled, Randomized Clinical Trial with Synthetic Crohn's disease Patients to Evaluate Treatment Response
- Abedi, V., P. Lu, R. Hontecillas, M. Verma, G. Vess, C. Philipson, A. Carbo, A. Leber, N.T. Juni, S. Hoops, J. Bassaganya-Riera. Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology – Systems & Applications. In Press: Elsevier/MK 2015.
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Modeling exercises
- Abedi, V., S. Hoops, R. Hontecillas, A. Carbo, C. Philipson, M. Viladomiu, A. Leber, P. Lu, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Multiscale Modeling: Concepts, Technologies, and Use Cases in Immunology
- Abedi, V., R. Hontecillas, A. Carbo, C. Philipson, S. Hoops, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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From Big Data Analytics and Network Inference to Systems Modeling
- Michalak, P., B.W. Sobral, V. Abedi, Y.B. Kim, X. Deng, C. Philipson, M. Viladomiu, P. Lu, K. Wendelsdorf, R. Hontecillas, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Agent-Based Modeling and High Performance Computing
- Alam, M., V. Abedi, J. Bassaganya-Riera, K. Wendelsdorf, K. Bisset, X. Deng, S. Eubank, R. Hontecillas, S. Hoops, M. Marathe. Computational Immunology: Models and Tools. Elsevier 2015.
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Ordinary Differential Equations (ODE) based Modeling
- Hoops, S., R. Hontecillas, V. Abedi, A. Leber, C. Philipson, A. Carbo, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Immunoinformatics cybernfrastructure for modeling and analytics
- Hoops, S., B.W. Sobral, P. Michalak, V. Abedi, B. Kronsteiner, R. Hontecillas, M. Viladomiu, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.
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Use of Computational Modeling in Immunological Research
- Hontecillas, R., J. Bassaganya-Riera, C. Philipson, A. Leber, M. Viladomiu, A. Carbo, K. Wendelsdorf, S. Hoops. Computational Immunology: Models and Tools. Elsevier 2015.
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Computational Modeling
- Bassaganya-Riera, J., R. Hontecillas, V. Abedi, A. Carbo, C. Philipson, S. Hoops. Computational Immunology: Models and Tools. Elsevier 2015.
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Introduction to Computational Immunology
- Bassaganya-Riera, J., R. Hontecillas. Computational Immunology: Models and Tools. Elsevier 2015.
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Modulation of CD8+ T cell Responses by Conjugated Linoleic Acid
- Bassaganya-Riera, J, R. Hontecillas. Advances in CLA Research. Champaign, IL: American Oil Chemists Society Press 2006.
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Computational Immunology: Models, tools and approaches for systems immunology
- Bassaganya-Riera, J.. Elsevier 2015.
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Literature mining and ontology mapping applied to big data
- Abedi V, M. Yeasin, R. Zand. Mining Big Data to Improve National Security. Elsevier 2015.
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Supervised Learning with Artificial Neural Network in Modeling of Cell Differentiation Process
- Lu, P, V. Abedi, Y. Mei, R. Hontecillas, C. Philipson, S. Hoops, A. Carbo, J. Bassaganya-Riera,. Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology (1st ed.). Burlington, Massachusetts: Morgan Kaufmann (an imprint of Elsevier) 2015. 1-18
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The M2 Pipeline: A Novel Tool for Rapidly Analyzing Host Metabolic Profiles from RNA-seq Data
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Abstract— A novel bioinformatics and data analytics pipeline that utilizes global gene expression datasets in combination with [...]