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Role of CD64+CX3CR1+ mononuclear phagocytes during Helicobacter pylori infection
Kronsteiner-Dobramysl, B., M. Viladomiu, J. Bassaganya-Riera, C. Phillipson, and R. Hontecillas, (2015) European Congress of [...]

The immune modulatory mechanisms of lanthionine synthetase C-like 2
Philipson, C., C. Hetzel, K. Eden, R. Hontecillas and J. Bassaganya-Riera (2015) The immune modulatory mechanisms of lanthionine [...]

Modeling mucosal immunity and gut microbiota interactions during Clostridium difficile infection
Viladomiu, M., A. Leber, R. Hontecillas. V. Abedi, S. Hoops, and J. Bassaganya-Riera (2015) Modeling mucosal immunity and gut [...]

Lanthionine synthetase C-like 2: A novel therapeutic target for inflammatory bowel disease
Carbo, A., R. Hontecillas, J. Cooper, R. Gandour, M. Ehrich, and J. Bassaganya-Riera. (2015) Lanthionine synthetase C-like 2: A novel [...]

Loss of NLRX1 results in increased intestinal pathology and T cell responses in mice with inflammatory bowel disease
Eden, K., R. Hontecillas, M. Viladomiu, C. Philipson, P. Michalak, A. Leber, N. Philipson, and J. Bassaganya-Riera (2015) Loss of NLRX1 [...]

NLRX1 attenuates tumorigenesis through the negative regulation of AKT and NF-kB signaling
Allen, I.C., A. Simmons, V. Capria, T. LeRoith, G. Robbins, B. Held, C.W. Philipson, N. Dervisis, V. Yuzbasiyan-Gurkan, R. [...]

Novel Orally Active Ligands of Lanthionine Synthetase C-like protein 2 Ameliorate Influenza-related Inflammation and Immunopathology
Philipson C.W., P. Lu, J. Bassaganya-Riera, S. Vento, A. Carbo, M. Viladomiu, S. Kale, X. Zhang, A. Uren, A. Kallarakal, B. Xu, and R. [...]

Mucosal antimicrobial protection toward Enteroaggregative Escherichia coli infection is modulated by dietary tryptophan through an IL17-dependent mechanism
Philipson C.W., J. Bassaganya-Riera, M. Viladomiu, A. Carbo, K. Eden, and R. Hontecillas (2014) Mucosal antimicrobial protection [...]

Regulation of Helicobacter Pylori Replication by Macrophage PPAR γ
Kronsteiner-Dobramysl B, J. Bassaganya-Riera, M. Viladomiu, C. Philipson, E. Schiff and R. Hontecillas (2014) Regulation of [...]

Immune modulatory mechanisms of Oncostenum bojerianum extracts during Clostridium difficile infection in mice
Viladomiu M., R. Hontecillas, D. GI. Kingston, A. Eaton, X. Zhang, C. W. Philipson, E. Schiff, K. Eden, P. Lu, A. Carbo and J. [...]

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Using Big Data to Inform Mental Health Policies
Andalib, M., G. Hughes, N. Hosseinichimeh, A.B. Lakeh, V. Abedi, R. Zand, N. Ghaffarzadegan. INFORMS 2015. Philadelphia, PA. November 1-4, 2015

ENISI Multiscale modeling of mucosal immune responses driven by high performance computing
Vida Abedi, Raquel Hontecillas, Stefan Hoops, Nathan Liles, Adria Carbo, Pinyi Lu, Cassandra Philipson and Josep Bassaganya-Riera. IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2015). Washington, DC, USA. 2015

Modeling Immunity to Enteric Pathogens
Bassaganya-Riera, J. (2015) Invited Speaker; Modeling Immunity to Enteric Pathogens, Modeling Immunity for Biodefense Summer School/Symposia, Rochester, NY

Modeling Immune responses to Helicobacter pylori
Bassaganya-Riera, J. (2015) Invited Speaker; Modeling Immune responses to Helicobacter pylori, Modeling Immunity for Biodefense, Rockville, MD

Computational modeling of mechanisms underlying immune responses to Helicobacter pylori
Bassaganya-Riera, J. (2015) Invited Speaker; Computational modeling of mechanisms underlying immune responses to Helicobacter pylori, AMS Esteren Sectional, Georgetown University, Washington, DC

Computational immunology in autoimmune diseases
Bassaganya-Riera, J. (2014) Invited Speaker; Computational immunology in autoimmune diseases, Feinstein Institute for Medical Research, Manhasset, NY

ENISI MSM: A novel multiscale modeling platform
Bassaganya-Riera, J. (2014) Invited Speaker; ENISI MSM: A novel multiscale modeling platform, IEEE International Conference: BIBM, Belfast, UK

Multiscale Modeling and Computational Immunology in Infectious Diseases
Bassaganya-Riera, J. (2014) Invited Speaker; Multiscale Modeling and Computational Immunology in Infectious Diseases, DoD, Dahlgren, VA

Mechanisms underlying immune responses to enteric pathogens
Bassaganya-Riera, J. (2013) Invited speaker; Mechanisms underlying immune responses to enteric pathogens, Division of Gastroenterology, VT Carilion School of Medicine, Roanoke, VA.

From the past to the future
Bassaganya-Riera, J. (2013) Session Chair; International Conference on Computational Biology: From the past to the future, Virginia Tech, Blacksburg, VA.

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Phase III Placebo-Controlled, Randomized Clinical Trial with Synthetic Crohn's disease Patients to Evaluate Treatment Response
Abedi, V., P. Lu, R. Hontecillas, M. Verma, G. Vess, C. Philipson, A. Carbo, A. Leber, N.T. Juni, S. Hoops, J. Bassaganya-Riera. Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology – Systems & Applications. In Press: Elsevier/MK 2015.

Modeling exercises
Abedi, V., S. Hoops, R. Hontecillas, A. Carbo, C. Philipson, M. Viladomiu, A. Leber, P. Lu, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.

Multiscale Modeling: Concepts, Technologies, and Use Cases in Immunology
Abedi, V., R. Hontecillas, A. Carbo, C. Philipson, S. Hoops, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.

From Big Data Analytics and Network Inference to Systems Modeling
Michalak, P., B.W. Sobral, V. Abedi, Y.B. Kim, X. Deng, C. Philipson, M. Viladomiu, P. Lu, K. Wendelsdorf, R. Hontecillas, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.

Agent-Based Modeling and High Performance Computing
Alam, M., V. Abedi, J. Bassaganya-Riera, K. Wendelsdorf, K. Bisset, X. Deng, S. Eubank, R. Hontecillas, S. Hoops, M. Marathe. Computational Immunology: Models and Tools. Elsevier 2015.

Ordinary Differential Equations (ODE) based Modeling
Hoops, S., R. Hontecillas, V. Abedi, A. Leber, C. Philipson, A. Carbo, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.

Immunoinformatics cybernfrastructure for modeling and analytics
Hoops, S., B.W. Sobral, P. Michalak, V. Abedi, B. Kronsteiner, R. Hontecillas, M. Viladomiu, J. Bassaganya-Riera. Computational Immunology: Models and Tools. Elsevier 2015.

Use of Computational Modeling in Immunological Research
Hontecillas, R., J. Bassaganya-Riera, C. Philipson, A. Leber, M. Viladomiu, A. Carbo, K. Wendelsdorf, S. Hoops. Computational Immunology: Models and Tools. Elsevier 2015.

Computational Modeling
Bassaganya-Riera, J., R. Hontecillas, V. Abedi, A. Carbo, C. Philipson, S. Hoops. Computational Immunology: Models and Tools. Elsevier 2015.

Introduction to Computational Immunology
Bassaganya-Riera, J., R. Hontecillas. Computational Immunology: Models and Tools. Elsevier 2015.

Modulation of CD8+ T cell Responses by Conjugated Linoleic Acid
Bassaganya-Riera, J, R. Hontecillas. Advances in CLA Research. Champaign, IL: American Oil Chemists Society Press 2006.

Computational Immunology: Models, tools and approaches for systems immunology
Bassaganya-Riera, J.. Elsevier 2015.

Literature mining and ontology mapping applied to big data
Abedi V, M. Yeasin, R. Zand. Mining Big Data to Improve National Security. Elsevier 2015.

Supervised Learning with Artificial Neural Network in Modeling of Cell Differentiation Process
Lu, P, V. Abedi, Y. Mei, R. Hontecillas, C. Philipson, S. Hoops, A. Carbo, J. Bassaganya-Riera,. Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology (1st ed.). Burlington, Massachusetts: Morgan Kaufmann (an imprint of Elsevier) 2015. 1-18

Method of Using Punicic Acid to Enhance Immune Response and Prevent Metabolic Disorders.
Bassaganya-Riera, J.
International Patent Application Serial No. PCT/US2005/001811 U.S. Patent No: 8,258,188

Method of Using Punicic Acid to Enhance Immune Response and Prevent Metabolic Disorders.
Bassaganya-Riera, J.
European Patent Application Serial No. 05711709.5

Method of Using Punicic Acid to Enhance Immune Response and Prevent Metabolic Disorders.
Bassaganya-Riera, J.
Chinese Patent Application Serial No. 2005800088789

Method of Using Catalpic Acid to Treat and Prevent Metabolic Disorders.
Bassaganya-Riera, J.
U.S. Patent No: 7,687,544

Method of Using Abscisic Acid to Treat and Prevent Diabetes and Inflammation.
Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
U.S. Patent No: 7,741,367.

Method of Using Abscisic Acid to Treat and Prevent Diseases and Disorders.
Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
U.S. Patent No: 1,986,624.

Method of Using Abscisic Acid to Treat and Prevent Diabetes and Inflammation.
Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
International Patent Application Serial No. PCT/US2007/003366

Method of Using Abscisic Acid to Treat and Prevent Diabetes and Inflammation.
Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
European Patent Application Serial No. 07763254.5

Method of Using Catalpic Acid to Treat and Prevent Hyperinsulinemia.
Bassaganya-Riera, J.
U.S. Patent No: 7,834,058

Method of Using Catalpic Acid to Dyslipidemia.
Bassaganya-Riera, J.
U.S. Patent No: 8,084,500

Method of using Conjugated Linoleic Acid to Enhance Thymocyte Development.
M. O’Shea and Bassaganya-Riera, J.
European Patent Application Serial No. 06250952.6

Method of using probiotic bacteria to prevent obesity and type 2 diabetes.
Bassaganya-Riera, J., R. Hontecillas, MG Dominguez-Bello, B. Sobral
U.S. Provisional Patent Application No: 60/942,016.

Method of Using Nutraceuticals for Ameliorating Hypertension and Vascular Inflammation.
Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
(08.094 VTIP Disclosure); U.S. Provisional Patent Application No: 61/095662. U.S. Patent Application No. 12/869,237.

Method of synergistically enhancing the therapeutic efficacy and safety of medications through a combination therapy.
Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
(09-070 VTIP Disclosure); U.S. Provisional Patent Application No: 61/147773. U.S. Patent Application No. 12/695,915; 13/905,888 & EU10736394.7

Method of synergistically enhancing the therapeutic efficacy and safety of medications through a combination therapy.
Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
International Patent Application Serial No. PCT/US2010/022390.

Method of using ABA for preventing and treating gut inflammatory disorders.
Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
(10-066 VTIP Disclosure). CIP Application No: 12/712,899; Issued 8,367,727

Method of using lanthionine synthetase component C-like proteins as molecular targets for preventing and treating diseases and disorders.
Bassaganya-Riera, J., P. Lu, and R. Hontecillas
(10-116 VTIP) Provisional Patent Application No: 61/331,086; U.S. Patent Application No. 13/100,795

Method of using lanthionine synthetase component C-like proteins as molecular targets for preventing and treating diseases and disorders.
Bassaganya-Riera, J., P. Lu, and R. Hontecillas
(10-116 VTIP) PCT/US11/35185. Notice of Allowance 13/100,795 and EU 11778258.1

Method of Preventing and Treating Inflammatory Diseases and Disorders with Abscisic Acid.
Bassaganya-Riera, J., A.J. Guri, and R. Hontecillas
(10-134 VTIP) Provisional Patent Application No: 61/348,326, International application number: PCT/US11/38063. Issue fee paid

Novel LANCL2-based Therapeutics.
Bassaganya-Riera, J., A. Carbo, J. Cooper, R. Gandour, and R. Hontecillas
Provisional Patent Applications No: 62/068,322 & 62/101,164.